{
  "_id": "6a200725b401979e73446a50",
  "Package": "tip",
  "Type": "Package",
  "Title": "Bayesian Clustering Using the Table Invitation Prior (TIP)",
  "Version": "0.1.0",
  "Authors@R": "c(person(family = \"Harrison\", \ngiven = \"Charles W.\",\nrole = c(\"cre\",\"aut\", \"cph\"),\nemail = \"cwhstat@gmail.com\"),\nperson(family = \"He\",\ngiven = \"Qing\",\nrole = c(\"aut\", \"cph\")),\nperson(family = \"Huang\",\ngiven = \"Hsin-Hsiung\",\nrole = c(\"aut\", \"cph\")))",
  "Description": "Cluster data without specifying the number of clusters\nusing the Table Invitation Prior (TIP) introduced in the paper\n\"Clustering Gene Expression Using the Table Invitation Prior\"\nby Charles W. Harrison, Qing He, and Hsin-Hsiung Huang (2022)\n<doi:10.3390/genes13112036>. TIP is a Bayesian prior that uses\npairwise distance and similarity information to cluster\nvectors, matrices, or tensors.",
  "License": "MIT + file LICENSE",
  "Encoding": "UTF-8",
  "RoxygenNote": "7.2.1",
  "VignetteBuilder": "knitr",
  "Language": "en-US",
  "Config/testthat/edition": "3",
  "Repository": "https://charleswharrison.r-universe.dev",
  "Date/Publication": "2024-11-02 23:23:09 UTC",
  "RemoteUrl": "https://github.com/charleswharrison/tip",
  "RemoteRef": "HEAD",
  "RemoteSha": "fe35a3b7ad0b66e2435593db033f5240fe86eec7",
  "NeedsCompilation": "no",
  "Packaged": {
    "Date": "2026-06-03 10:47:10 UTC",
    "User": "root"
  },
  "Author": "Charles W. Harrison [cre, aut, cph],\nQing He [aut, cph],\nHsin-Hsiung Huang [aut, cph]",
  "Maintainer": "Charles W. Harrison <cwhstat@gmail.com>",
  "MD5sum": "26f167ba1ee982037f3504872cfaada6",
  "_user": "charleswharrison",
  "_type": "src",
  "_file": "tip_0.1.0.tar.gz",
  "_fileid": "c9a7a326c04ea27dbc3c6c0c577cb4a899359a68e4e95dc0a0d0c4931dc77dbc",
  "_filesize": 3022326,
  "_sha256": "c9a7a326c04ea27dbc3c6c0c577cb4a899359a68e4e95dc0a0d0c4931dc77dbc",
  "_created": "2026-06-03T10:47:10.000Z",
  "_published": "2026-06-03T10:51:17.235Z",
  "_distro": "noble",
  "_jobs": [
    {
      "job": 79276698165,
      "time": 142,
      "config": "linux-devel-x86_64",
      "r": "4.7.0",
      "check": "NOTE",
      "artifact": "7382494803"
    },
    {
      "job": 79276698190,
      "time": 144,
      "config": "linux-release-x86_64",
      "r": "4.6.0",
      "check": "NOTE",
      "artifact": "7382495414"
    },
    {
      "job": 79276698236,
      "time": 203,
      "config": "macos-oldrel-arm64",
      "r": "4.5.3",
      "check": "NOTE",
      "artifact": "7382502893"
    },
    {
      "job": 79276698178,
      "time": 174,
      "config": "macos-release-arm64",
      "r": "4.6.0",
      "check": "NOTE",
      "artifact": "7382495064"
    },
    {
      "job": 79276146690,
      "time": 200,
      "config": "source",
      "r": "4.6.0",
      "check": "OK",
      "artifact": "7382445720"
    },
    {
      "job": 79276698294,
      "time": 124,
      "config": "wasm-release",
      "r": "4.6.0",
      "check": "OK",
      "artifact": "7382488158"
    },
    {
      "job": 79276698426,
      "time": 102,
      "config": "windows-devel",
      "r": "4.7.0",
      "check": "NOTE",
      "artifact": "7382481554"
    },
    {
      "job": 79276698214,
      "time": 84,
      "config": "windows-oldrel",
      "r": "4.5.3",
      "check": "NOTE",
      "artifact": "7382474879"
    },
    {
      "job": 79276698231,
      "time": 111,
      "config": "windows-release",
      "r": "4.6.0",
      "check": "NOTE",
      "artifact": "7382484591"
    }
  ],
  "_buildurl": "https://github.com/r-universe/charleswharrison/actions/runs/26879650025",
  "_status": "success",
  "_host": "GitHub-Actions",
  "_upstream": "https://github.com/charleswharrison/tip",
  "_commit": {
    "id": "fe35a3b7ad0b66e2435593db033f5240fe86eec7",
    "author": "CharlesWHarrison <70669414+CharlesWHarrison@users.noreply.github.com>",
    "committer": "GitHub <noreply@github.com>",
    "message": "Update DESCRIPTION\n\nUpdated the maintainer's email address.",
    "time": 1730589789
  },
  "_maintainer": {
    "name": "Charles W. Harrison",
    "email": "cwhstat@gmail.com"
  },
  "_registered": true,
  "_dependencies": [
    {
      "package": "rlang",
      "role": "Imports"
    },
    {
      "package": "igraph",
      "role": "Imports"
    },
    {
      "package": "network",
      "role": "Imports"
    },
    {
      "package": "ggplot2",
      "role": "Imports"
    },
    {
      "package": "GGally",
      "role": "Imports"
    },
    {
      "package": "LaplacesDemon",
      "role": "Imports"
    },
    {
      "package": "changepoint",
      "role": "Imports"
    },
    {
      "package": "parallel",
      "role": "Imports"
    },
    {
      "package": "doParallel",
      "role": "Imports"
    },
    {
      "package": "foreach",
      "role": "Imports"
    },
    {
      "package": "methods",
      "role": "Imports"
    },
    {
      "package": "mniw",
      "role": "Imports"
    },
    {
      "package": "knitr",
      "role": "Suggests"
    },
    {
      "package": "sna",
      "role": "Suggests"
    },
    {
      "package": "mcclust",
      "role": "Suggests"
    },
    {
      "package": "SMFilter",
      "role": "Suggests"
    },
    {
      "package": "rmarkdown",
      "role": "Suggests"
    },
    {
      "package": "spelling",
      "role": "Suggests"
    },
    {
      "package": "testthat",
      "version": ">= 3.0.0",
      "role": "Suggests"
    }
  ],
  "_owner": "charleswharrison",
  "_selfowned": true,
  "_usedby": 0,
  "_updates": [],
  "_tags": [],
  "_stars": 0,
  "_contributors": [
    {
      "user": "charleswharrison",
      "count": 205,
      "uuid": 70669414
    }
  ],
  "_userbio": {
    "uuid": 70669414,
    "type": "user",
    "name": "CharlesWHarrison"
  },
  "_downloads": {
    "count": 121,
    "source": "https://cranlogs.r-pkg.org/downloads/total/last-month/tip"
  },
  "_devurl": "https://github.com/charleswharrison/tip",
  "_searchresults": 42,
  "_rbuild": "4.6.0",
  "_assets": [
    "extra/citation.cff",
    "extra/citation.html",
    "extra/citation.json",
    "extra/citation.txt",
    "extra/contents.json",
    "extra/readme.html",
    "extra/readme.md",
    "extra/tip.html",
    "manual.pdf"
  ],
  "_homeurl": "https://github.com/charleswharrison/tip",
  "_realowner": "charleswharrison",
  "_cranurl": true,
  "_releases": [
    {
      "version": "0.1.0",
      "date": "2022-11-14"
    }
  ],
  "_exports": [
    "get_cpt_neighbors",
    "ggnet2_network_plot",
    "ggplot_line_point",
    "ggplot_number_of_clusters_hist",
    "ggplot_number_of_clusters_trace",
    "partition_undirected_graph",
    "plot",
    "tip"
  ],
  "_help": [
    {
      "page": "bcm-class",
      "title": "Bayesian Clustering Model (bcm) S4 class.",
      "topics": [
        "bcm-class"
      ]
    },
    {
      "page": "get_cpt_neighbors",
      "title": "Estimate the number of similar subjects",
      "topics": [
        "get_cpt_neighbors"
      ]
    },
    {
      "page": "ggnet2_network_plot",
      "title": "Visualize the posterior similarity matrix (i.e., posterior probability matrix)",
      "topics": [
        "ggnet2_network_plot"
      ]
    },
    {
      "page": "ggplot_line_point",
      "title": "Plot connected points using ggplot2",
      "topics": [
        "ggplot_line_point"
      ]
    },
    {
      "page": "ggplot_number_of_clusters_hist",
      "title": "Plot the posterior distribution of the number of clusters.",
      "topics": [
        "ggplot_number_of_clusters_hist"
      ]
    },
    {
      "page": "ggplot_number_of_clusters_trace",
      "title": "Plot the trace plot of the posterior number of clusters",
      "topics": [
        "ggplot_number_of_clusters_trace"
      ]
    },
    {
      "page": "partition_undirected_graph",
      "title": "Partition an undirected graph",
      "topics": [
        "partition_undirected_graph"
      ]
    },
    {
      "page": "plot.bcm",
      "title": "Generate plots from a Bayesian Clustering Model (bcm) object",
      "topics": [
        "plot",
        "plot,bcm,missing-method"
      ]
    },
    {
      "page": "tip",
      "title": "Bayesian Clustering with the Table Invitation Prior",
      "topics": [
        "tip"
      ]
    }
  ],
  "_readme": "https://github.com/charleswharrison/tip/raw/HEAD/README.md",
  "_rundeps": [
    "changepoint",
    "cli",
    "coda",
    "codetools",
    "cpp11",
    "crayon",
    "doParallel",
    "dplyr",
    "farver",
    "forcats",
    "foreach",
    "generics",
    "GGally",
    "ggplot2",
    "ggstats",
    "glue",
    "gtable",
    "hms",
    "igraph",
    "isoband",
    "iterators",
    "labeling",
    "LaplacesDemon",
    "lattice",
    "lifecycle",
    "magrittr",
    "Matrix",
    "mniw",
    "network",
    "patchwork",
    "pillar",
    "pkgconfig",
    "prettyunits",
    "progress",
    "purrr",
    "R6",
    "RColorBrewer",
    "Rcpp",
    "RcppEigen",
    "rlang",
    "S7",
    "scales",
    "statnet.common",
    "stringi",
    "stringr",
    "tibble",
    "tidyr",
    "tidyselect",
    "utf8",
    "vctrs",
    "viridisLite",
    "withr",
    "zoo"
  ],
  "_vignettes": [
    {
      "source": "vector-NIW-iris-vignette.Rmd",
      "filename": "vector-NIW-iris-vignette.html",
      "title": "iris-NIW-vignette",
      "engine": "knitr::rmarkdown",
      "headings": [],
      "created": "2022-10-23 15:11:13",
      "modified": "2022-11-09 03:14:45",
      "commits": 3
    },
    {
      "source": "matrix-CONSTANT-simulated-vignette.Rmd",
      "filename": "matrix-CONSTANT-simulated-vignette.html",
      "title": "matrix-clustering-CONSTANT-vignette",
      "engine": "knitr::rmarkdown",
      "headings": [],
      "created": "2022-10-23 15:11:13",
      "modified": "2022-11-09 03:14:45",
      "commits": 4
    },
    {
      "source": "matrix-MNIW-simulated-vignette.Rmd",
      "filename": "matrix-MNIW-simulated-vignette.html",
      "title": "matrix-clustering-MNIW-vignette",
      "engine": "knitr::rmarkdown",
      "headings": [],
      "created": "2022-10-23 15:11:13",
      "modified": "2022-11-09 03:14:45",
      "commits": 4
    },
    {
      "source": "tensor-CONSTANT-simulated-vignette.Rmd",
      "filename": "tensor-CONSTANT-simulated-vignette.html",
      "title": "tensor-clustering-CONSTANT-vignette",
      "engine": "knitr::rmarkdown",
      "headings": [],
      "created": "2022-10-23 15:11:13",
      "modified": "2022-11-09 03:14:45",
      "commits": 6
    },
    {
      "source": "vector-NIW-usarrests-vignette.Rmd",
      "filename": "vector-NIW-usarrests-vignette.html",
      "title": "usarrests-NIW-vignette",
      "engine": "knitr::rmarkdown",
      "headings": [],
      "created": "2022-10-23 15:11:13",
      "modified": "2022-11-09 03:14:45",
      "commits": 3
    }
  ],
  "_score": 5.021189299069938,
  "_indexed": true,
  "_nocasepkg": "tip",
  "_universes": [
    "charleswharrison"
  ],
  "_binaries": [
    {
      "r": "4.7.0",
      "os": "linux",
      "version": "0.1.0",
      "date": "2026-06-03T10:49:24.000Z",
      "distro": "noble",
      "commit": "fe35a3b7ad0b66e2435593db033f5240fe86eec7",
      "fileid": "05a12d75852990c06dfcc454f7955b94ef109b6eeded7adf2fc3296f216bd789",
      "status": "success",
      "check": "NOTE",
      "buildurl": "https://github.com/r-universe/charleswharrison/actions/runs/26879650025"
    },
    {
      "r": "4.6.0",
      "os": "linux",
      "version": "0.1.0",
      "date": "2026-06-03T10:49:24.000Z",
      "distro": "noble",
      "commit": "fe35a3b7ad0b66e2435593db033f5240fe86eec7",
      "fileid": "12c0db9c67b70880ec5ec18a05eee61bed3246e6ee1eb34917d40cf005b5b652",
      "status": "success",
      "check": "NOTE",
      "buildurl": "https://github.com/r-universe/charleswharrison/actions/runs/26879650025"
    },
    {
      "r": "4.5.3",
      "os": "mac",
      "version": "0.1.0",
      "date": "2026-06-03T10:49:56.000Z",
      "commit": "fe35a3b7ad0b66e2435593db033f5240fe86eec7",
      "fileid": "4fa54362045ddb16b742a90e4d843043eae24205b12c8721c6c149cc27e59781",
      "status": "success",
      "check": "NOTE",
      "buildurl": "https://github.com/r-universe/charleswharrison/actions/runs/26879650025"
    },
    {
      "r": "4.6.0",
      "os": "mac",
      "version": "0.1.0",
      "date": "2026-06-03T10:49:26.000Z",
      "commit": "fe35a3b7ad0b66e2435593db033f5240fe86eec7",
      "fileid": "09ad8182605b393f83dcaf65917d788704c17c19cae83c11ebfbf7398e015489",
      "status": "success",
      "check": "NOTE",
      "buildurl": "https://github.com/r-universe/charleswharrison/actions/runs/26879650025"
    },
    {
      "r": "4.6.0",
      "os": "wasm",
      "version": "0.1.0",
      "date": "2026-06-03T10:49:31.000Z",
      "commit": "fe35a3b7ad0b66e2435593db033f5240fe86eec7",
      "fileid": "482f39373870487711caeab4df3671b926e63e96a16dd28d7a28397cf5315502",
      "status": "success",
      "buildurl": "https://github.com/r-universe/charleswharrison/actions/runs/26879650025"
    },
    {
      "r": "4.7.0",
      "os": "win",
      "version": "0.1.0",
      "date": "2026-06-03T10:48:31.000Z",
      "commit": "fe35a3b7ad0b66e2435593db033f5240fe86eec7",
      "fileid": "a542f8892d0c4df9c6fb6eebf2619971f57120be6421aa7399c920a00d6250ed",
      "status": "success",
      "check": "NOTE",
      "buildurl": "https://github.com/r-universe/charleswharrison/actions/runs/26879650025"
    },
    {
      "r": "4.5.3",
      "os": "win",
      "version": "0.1.0",
      "date": "2026-06-03T10:48:20.000Z",
      "commit": "fe35a3b7ad0b66e2435593db033f5240fe86eec7",
      "fileid": "34232c31fd8a42ca4451acd0bffe46b4b350daf137f693e001b543246b548511",
      "status": "success",
      "check": "NOTE",
      "buildurl": "https://github.com/r-universe/charleswharrison/actions/runs/26879650025"
    },
    {
      "r": "4.6.0",
      "os": "win",
      "version": "0.1.0",
      "date": "2026-06-03T10:48:44.000Z",
      "commit": "fe35a3b7ad0b66e2435593db033f5240fe86eec7",
      "fileid": "032faba8dc9c7177f4b8ab0af548042f5e313c4da6a76ddff655802fa91e5b1a",
      "status": "success",
      "check": "NOTE",
      "buildurl": "https://github.com/r-universe/charleswharrison/actions/runs/26879650025"
    }
  ]
}